Scaffold Ga0255090_1006634

Overview

Basic Information

• Taxon OID: 3300027123
• Scaffold ID: Ga0255090_1006634
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2452
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F005504	Metagenome / Metatranscriptome	398	Y
F069753	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255090_10066341	F069753	AGGCGG	MQTKEQKIGELLANSVEDHFFNPAALGRYLAEQPTYTIDRIVEVVAWIIEKQARRYEREVEVGGQISEGLAIAYKLDQVI
Ga0255090_100663411	F005504	N/A	YEIVRGDVKTILEYENRCYACQSFDTLSYCEDDCGEFCSECNQGSWQDEEAMKECQTHMVLLDTTEKAEV
Ga0255090_10066342	F000852	AGGCGG	LTKSAISYIINITNNYLLKGDYNMATKREYLKSKGITVGARGRFSAAAKQALTEAQSQGVTFEAEKPTPKK