Scaffold Ga0255090_1000680

Overview

Basic Information

• Taxon OID: 3300027123
• Scaffold ID: Ga0255090_1000680
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10295
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F028148	Metagenome	192	Y
F086618	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255090_100068011	F086618	N/A	MKSIQRIETAVGNLINGNLTHARKSARGLTYSDIFDWLTGPVGWPESRSRACANYLIGRIDYRTYCNADR
Ga0255090_100068012	F028148	N/A	MKTIHEIIQEIQFFDPAIRAFDAHDLPQSVRAYLHHNYRMDARLTDEEQQLIEVSFEPFADNIREVFQDDPRPDATRFYLFDDLSLYIRTNAGPELWADAQVFVVERILPAMRLTRLEADLMREIGMDEQVSEVRDDFYSSFAHVLHRDCGIPHCDAREHWNAWSNQLSDSACESIVLGGGESGRVEGLRFASEYAVKA
Ga0255090_100068017	F001964	GGAGG	MSRNLFAPPIFKVQINGAIGWSDLKQRVVSFRTIEYATRKEAESAAKELNPGEYTQGRIRVVPVEMPEDYDVYPVTERVSEKPKSAG
Ga0255090_10006807	F000922	N/A	MGNCWGKRGKTKRGKGVATGNATADPDSMTKAQWERAKAEYLTGKGWKAIADDLSVPMDTLRSRACREGLTKVKAQMQTVCIEKKTQSLESLSALVRSKLAADAASTLERIDSYDLDGIKDESTREQILGSVAKRSALVFGWSEQGESASVSINLLGSMPDRVAEIQVTNETETK