Scaffold Ga0255074_1005319

Overview

Basic Information

• Taxon OID: 3300027121
• Scaffold ID: Ga0255074_1005319
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1789
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010317	Metagenome / Metatranscriptome	305	Y
F038644	Metagenome / Metatranscriptome	165	Y
F041755	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_10053193	F010317	AGAAG	MKKVYIQTLKKIYIEKLAEVPGGLPARSMEEYVDGQYQGDSHSIPVEYNLEGILSFPIKVGESVIVERTKRNGVEAFGMFSTSRVTEVGNNYFKTKNSVYSYKFL
Ga0255074_10053194	F038644	N/A	MRAVKITDLPNGAWKQYALEAQRRGIEILGHDILNATDITLIGAIDMIRELTEKIEKKTE
Ga0255074_10053196	F041755	N/A	MSGKEIHEKYPIINTKWKYSNYKSEWNGYEGFYYSFYRDWATEVMTDPWYRNLINNGYPINTTELVSILSTTVEGNKIKLIIYLKTYV