NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255074_1004134

Scaffold Ga0255074_1004134


Overview

Basic Information
Taxon OID3300027121 Open in IMG/M
Scaffold IDGa0255074_1004134 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2049
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F002241Metagenome / Metatranscriptome579Y
F018948Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0255074_10041343F002241AGGMSKPHSIRYIRQMMEWGFDKEFIARDCGINVSSLDVRLNRAKKREQDGNQGTESGTSGGKSDS
Ga0255074_10041344F000545N/AMIKDAHPFPCSNCKLVTPHIELKRYNTEHLSEAPEEVWLVECQRCFLQRIIYPSDRVASKEDDIVRCEQCGGWKMKSGKCRVCRLAAGFEQISVKYWTGNSTMERLYNDEQTSLY
Ga0255074_10041345F018948N/ANDPDPIVWDVTAIAEQLGAEVIDEMPLCKCGRGPMILKSGTKEGKEYRGYTCPSRERADQCPARWMRIGADGHWVFQK

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