Scaffold Ga0255074_1002418

Overview

Basic Information

• Taxon OID: 3300027121
• Scaffold ID: Ga0255074_1002418
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2745
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F028145	Metagenome / Metatranscriptome	192	N
F030360	Metagenome / Metatranscriptome	185	N
F043356	Metagenome / Metatranscriptome	156	N
F045700	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_10024183	F028145	N/A	MKLFLVFFINLTVSLLSSILLYKLFKVDVSPTIISIGLIVAYMFLPQRFHDWIAEK
Ga0255074_10024184	F045700	GGA	MKTRPSQCFECETGTYKDVTVNYFSQLNDGKGCVTKDVTIQRCDTCGAEIFDSRASQMVENNIRQQYPDYYEHSCSRKFKK
Ga0255074_10024185	F000962	N/A	MNIHVPENLKSKYPHMEFRGKPRQLNDRTVMEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0255074_10024186	F030360	N/A	MSEQTYMNLKDVVKRPVLSEKTVNRSNKAFVRMVDSYQKWNESITADEPRATYEDDIFNCLFEYDMDGYNLAEYLKSKVYLEPDADLCAILDDMIYVKKSLEDEMLKQWVTENFLTISDDVVGKKVNAKQGSRKYENHYITGIRPDTYQVTISDNINAKGGRIVGFENVTFVD
Ga0255074_10024189	F043356	N/A	MKIDIQKVDLTQFMVHEHSLNGEIVYLIQPQHIGTKWHQDNK