Scaffold Ga0255074_1001897

Overview

Basic Information

• Taxon OID: 3300027121
• Scaffold ID: Ga0255074_1001897
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3092
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005299	Metagenome / Metatranscriptome	405	Y
F017128	Metagenome	242	Y
F025025	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_10018971	F005299	N/A	HNPHTFDGFDTANETWEQKVGYDSANKRMVAKVYKHLYNVMNFEVKPSWLKVITEMLTEDNKLGKVSLNGYYSTIRKNLKDIEVIKYNGRKGLSKGKNWERFYSDEDWTWFITNTNSGGYGRIVK
Ga0255074_10018973	F025025	N/A	MSKKIKEIKLGKRGYKAIVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYIGDIEVETKMDKLETSLIKNVLSKKDKKELLASKVMEGALVSNKAMVDTAYSTFYNGGSISVETTKGNGEDTDK
Ga0255074_10018978	F017128	N/A	MDTITHIDIERYNSIEIDRHNTMGDNNFIEWCKQYNIGSRVEVVSEQRLKANELMSQYTKYTHYISKRN