Scaffold Ga0255074_1000575

Overview

Basic Information

• Taxon OID: 3300027121
• Scaffold ID: Ga0255074_1000575
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5464
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F019614	Metagenome / Metatranscriptome	228	N
F029411	Metagenome / Metatranscriptome	188	Y
F082581	Metagenome	113	N
F085603	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_100057510	F082581	N/A	MNNVTNDSNMNSTSTKTAKVGRPSTNLKLILNKSFTLKDLQNLNPDVKFVTIRAAVLRGLSNGKYTKLPRNVQTGRKGKPANIFINSKVYKANLANLAKSKVTINVNEPVTVDQPVTA
Ga0255074_100057511	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIKKENGVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIGQAEERFDQLVIKAKESAEAKEEAAKTGVRNRGRRGTNKQIKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGSIKVNGTVKGEGKGRPATEYIVV
Ga0255074_100057512	F015582	N/A	LQSEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKLSMLEEIHAEIRAKYPGFMPEYDALSDPEYNQAVGKYQETTYSFSSRDLHSSSNSXKKPLTLA
Ga0255074_10005752	F029411	N/A	MNADFNTIDPQNELSDLYTPDYREEALNEDRYLEMAYEDRFEMPCMEDYQ
Ga0255074_10005757	F085603	N/A	MKVQIEFNTDNAAFEDSFLMEVTRTLQQCKSALLDSEKGTITIRHILKDINGNRIGVINIGKN
Ga0255074_10005758	F019614	N/A	MNVASISSNKIQVEYSAMPGDNREFLTFSVPNGWDDVKKLTNKVLTYNNKDFTFSGWNSDRNECYFVRLVNGPSFVASIR
Ga0255074_10005759	F006181	N/A	MKRNLIHVIYPDEAVNSFVMTTDMSTADILERVFAEWNHGSGRECEMFINSKKRSLSVNDIVCVNGTYFQCASVGWYEVSPDYVNALEKEVADHPSRLDGAWFALSEVMWGRKCVVETV