Scaffold Ga0255074_1000111

Overview

Basic Information

• Taxon OID: 3300027121
• Scaffold ID: Ga0255074_1000111
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12104
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (56.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022161	Metagenome / Metatranscriptome	215	Y
F026862	Metagenome / Metatranscriptome	196	Y
F030736	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_100011114	F026862	GGAG	MANHVNTHVNFDKLSDAGKAKLQELYSRVRTRTGPDKAVIYEWFSDIFGLDPEITDKYDWNLENIGPKWCHFEDRGDDYFTTISAWSFPQQGLEWLFEQIKQVDPDFVASVFYQDEMPNFFGVYVYNKDGMIDGCEWGEEGEIEEMMHEMVPSLRELDQEEQNQVYFDIWCEHIWDLVEDKQQQVYNDIMEHIKNRE
Ga0255074_100011134	F030736	GAG	MPKHSINKPQCFTDFQWEVYRQELQEVKNSKTLDICFDCTVEYQRQMRNENKCAFPMKRLDKVTEYV
Ga0255074_100011137	F022161	AGG	MKNEHGHCPNCNADLDGGSIWEHFFQKTGSEEEADKAAKVYGATREKGQWGRAIALYDRDEDRTVAWKCPDCGHVWERT