Scaffold Ga0255074_1000069

Overview

Basic Information

• Taxon OID: 3300027121
• Scaffold ID: Ga0255074_1000069
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15121
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009264	Metagenome / Metatranscriptome	320	N
F009682	Metagenome / Metatranscriptome	314	Y
F010397	Metagenome / Metatranscriptome	304	Y
F085697	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_10000693	F009264	N/A	MRAYLEFSLIDDEVDHLIKIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCVTYSSDKIVGVELEFRDYPYKIDDCQMNPRISVKLDYDDFNKKMDYVCFQNLKYQAIVYFAPDSWNCSRNSKKIKF
Ga0255074_100006933	F085697	N/A	MNSELKITIQEIVDLRVALNNAERRIKELMALKHEDWHKLYHLDIHSIEKGKQALTNVIQRD
Ga0255074_10000697	F010397	N/A	MNISEFERHKPVVTMHKINDLIKRIEDEKYKTEQLYKDRIMSLNTIHELLLSVKDSFKKG
Ga0255074_10000699	F009682	GAG	MEKELYLKDKYPVVSDDLKFDGKNIIMPSYYAGLISEYLANVDLKSANFNDADMHDYLAFCSFFEAVVDYKNSGN