Scaffold Ga0255074_1000068

Overview

Basic Information

• Taxon OID: 3300027121
• Scaffold ID: Ga0255074_1000068
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15168
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F001322	Metagenome	722	Y
F002241	Metagenome / Metatranscriptome	579	Y
F009683	Metagenome / Metatranscriptome	314	Y
F014613	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_100006815	F001322	N/A	MTLWNPVYRVKVDGVTVTGATLSGLTITSGRTDIYQQPIAGYCNLSLIETAEAAVPYEVNDAVTIEVQDSNGDYVNLFGGFITDLGITVQTSGSTATSQQIRIVAVGALARLARAVYTGNFAHQFDGDRIEELLSTVLFDQWNEVPAAEAWNDYDATTQWQDAENSGLGEIDTPGDYELHSETGLNDTVYNLASGYATSGLGYLYEDSQGRIGYADSTHRSQYLSTNGYVDLDGNHAIGPALSIVKRAGDVRNAITVGYGTGSASVTDDDAASISLYGQLATTISTTLRHQADAEAQAAFYLLIRAYPQFALRQITFTTASPEIDDADRDSLLNVFMGMPLNITNLPSNMTDGEFQGFVEGWTWTAGLNRLDLTMNLSPIAFSLQAFRWNSVPAVESWNTINPLLEWYNATIVA
Ga0255074_10000683	F002241	GGAGG	MAKQENGDKPHSIRYIRQLIEWGFDKEFIAKDCGINVSSLDVRLNRAKKREQDGNQGTEPGTSSGESNS
Ga0255074_10000684	F000545	N/A	MDENWSRWALGLSEMIKDAHPFPCSNCKLVTPHTEIKRYNTEDVSEAPEEVWLVECQRCFLQRIIYPSDRVASKEDDIVRCEQCGGYKMKAASCKVCRIAAGFERISEKYWTGNATLTKDYDAEI
Ga0255074_10000685	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVNSCDVYIIKTELYRTEADIHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKINQSPKKAIETTKPALAEFIKKQRPNDPDPIVWDVTAIAEQLGAEVIDEMPLCKCGRGPMILKSGTKEGKEYRGYTCPSRERADQCPARWMKIGADGHWVFQK
Ga0255074_10000686	F009683	AGG	MKVIREAGQVSDTQKSLNEWLEEAGNTLFDRGIEYGDPRHNLLRIFKISKALGIQLRDPSDLAIIAIATKLSRMVESPEREDSYLDLIGYAAILGRLRFSSPEDWDDIESDSQSQ
Ga0255074_10000687	F014613	GAG	MFPNLSDTQVFAITIGVPFFGLYLWALWSSAKAKAFNEGYKRGRSSVRYTEVLK