Scaffold Ga0255074_1000053

Overview

Basic Information

• Taxon OID: 3300027121
• Scaffold ID: Ga0255074_1000053
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16587
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (22.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010317	Metagenome / Metatranscriptome	305	Y
F019468	Metagenome / Metatranscriptome	229	N
F023343	Metagenome / Metatranscriptome	210	Y
F034088	Metagenome / Metatranscriptome	175	N
F037223	Metagenome / Metatranscriptome	168	N
F055719	Metagenome / Metatranscriptome	138	N
F058755	Metagenome	134	N
F065711	Metagenome / Metatranscriptome	127	N
F102702	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_100005312	F055719	N/A	MMNKMLQKIVTKWKYTESDVDGTSVYHNKANANKMLQQILTKWTGSNKTNKIKKKG
Ga0255074_100005313	F065711	GGTGG	MKLIDVDNAEVEVEDSWQEECPQCGDTNVECFYVPNWAATRCYDCLVNEVIKFHYRVEEK
Ga0255074_100005326	F023343	N/A	MSIKYNNVNSASFGLNDFKEEMAMMMFGRSFALAQVGKQCVVCGKRAEFFSCDRAAREFKISSMCEPCQNEVFESMEDEG
Ga0255074_100005327	F034088	N/A	LTVTDSSCILVSMSEGRISVNKVTVTKPVSIEGDLYIEIQVPNGWDDVKKLVNKVIEVNQLDFSYTGWNSDKNIAYFKHKHKTVGIIRN
Ga0255074_100005329	F037223	N/A	MTLFEHILIEGRVDDFKKMLSQRFSIDYVQKIINRDTSKNHKNLLWIGKILKTEPDINDEDLFKNLEIFNKVASSTDLYSFRDYSTFLNFLQKKSKEVQMGKMAQIKAGSHTIKDDKRWLVVAPQTHDASRYFGGGTSWCISTSNDRYWKDYYYAQTIVMIKDRTKKPDNDLFKVAIVGNAYEQLWDTNQDDKLNKIRELVKHVDLYNVNDNKLSGDQKINYLGQLPEDLIEDLMNYFNDDEIYERQNDHYYELARERYDNGGKEELLKSLFNTTVAYFDADVDFHADDFGDLMSRQFADEIQDGNWDEFLSELWGACITDQGVEDDSFYAEVNTRNFKNLISNTNYDLQTYLDLAKEVLKNEDISNMDDIIKDALIKTSDNGDPYTVIKRQANQLKDTNYNDIILSSLNAYNVKNNPTFIQGQRSLGPDFMGIVNKFKPKNIEDVIKVLSINPRAKDMIDQIQRYRRDLYESKKKRSIKYRDFYKL
Ga0255074_10000533	F010317	N/A	MKSIYIEKLAEVPGGLPARNMEEHIDGQYQGDSHSIPVEYNLEGVLSYDIEVGKSVVVGRTKRNGVEAYGVFSTSRVTEVGNNYFKTMNSVYLYKYLSL
Ga0255074_100005330	F102702	GAG	MNNEGISLIDTKKGIPRLNFRFDKDYPEDFISIGSGKFIKKRTGDVNLIYLAHKFMSEKEVMDQLSYYINQTDINANPTINAKIARYPDLFFTYKKEIRKAIKNLSATDYISFTGKNIEDVKTMIHRGILDFNNRINYVKDYDLIITVPSQSPLNQMIVNEFKSYIDPKKTLVIDDFLLKNRIKNIRWDNNEYLEVEEREGKNPEQIAKVRKMRDIMLKSVYSKGNLNKDFQVKMVTKPSLRRYFNKFMHINDKLDEQLFLKINNGKILIIDDSFGSGVTMKEASRAIKHLNPKEVDAFILLHDYAPSAIKTS
Ga0255074_10000534	F019468	N/A	MTIEKTYKLSIKDTAYFLTEEEVTKLYEQCRKALNIDNANPYFPNYPPGVRKFDDDKTKPLNPTTPSIPYPYDTYPWYAPGTGTPYWTYVQSTSPTTTCGTINAGEGICVKDTNWQPNLCNTVKSSNGINFLSDDMETIKENDKWRSSVQQALDKLSAKTNVTTSDGTTIR
Ga0255074_100005340	F058755	N/A	AFELNRQEIKILENLIAELYTIVEPTRIPGYTDDQMFEANANNEFTVTIGREIQAEIIANGRPSPAKLLNAMSNPQTLESLKLVGLVPKETILLEQSDIIDALKLNNINEPKLIE