Scaffold Ga0255074_1000052

Overview

Basic Information

• Taxon OID: 3300027121
• Scaffold ID: Ga0255074_1000052
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16627
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (85.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012967	Metagenome / Metatranscriptome	275	Y
F015854	Metagenome / Metatranscriptome	251	Y
F016938	Metagenome / Metatranscriptome	243	Y
F022591	Metagenome / Metatranscriptome	213	Y
F045570	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255074_10000521	F015854	AGG	MSNALDSFVTYLADGNTVTSRQIRAMFKVDNAADLAYRARNEGISVYTNRVTNSRGEKVFAYRLGNPSAQFEKYLEQGKIARARKTLYRDAINVSMTA
Ga0255074_100005212	F045570	GGAG	VATRRNFFKYLGLAGGVATGGVVAAAAVLPDAEKCEAIKEIKAAGYNGKLNIGTEYGELAPPNGTISFGPKFVPGTEKRVTASMTVGPDGEMYLMTNGKWRRIVTE
Ga0255074_100005219	F022591	N/A	MKCENTVKIGDVVKSLDFVGVNDCFYVGLVVGISKMDGTFRAKTIKRVWQGQIDKKIPSDFFTAPMPGNFLFDDEFTTPRIQVVA
Ga0255074_100005222	F016938	N/A	MKKQTETLLSEAIDLVNGVDHVLANTMTQYDLSAKNCYDLAEKLERARNLLLVVGDRKYQAELNQVSIPTEGVPF
Ga0255074_100005225	F012967	AGG	MTNDHNAYAYRRSVLASKARVAFDPSNKKHMLDFAKFVKYNSWRDGCSYFLEDPFTDIPTMIRSKIADHTLSKLVEKV