Scaffold Ga0208009_1020871

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1020871
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1468
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010232	Metagenome / Metatranscriptome	306	Y
F010612	Metagenome	301	Y
F051888	Metagenome / Metatranscriptome	143	Y
F056557	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_10208712	F010612	AGGAGG	MEFFNPNSEEDTPQWQHTVWIMAKVRCRTTHIDIDRAGDEALDDPQEWEVLKFDKGIKHSQEIVRVK
Ga0208009_10208713	F010232	AGG	MRTHEELMKIKEAFALAMLDLLDVYDELLATGRVWVAPEPTINDLLKNEEESNGVL
Ga0208009_10208714	F056557	AGGAG	MYLDTGTMIGIMIALVGSILTIAYCLYIINTQNQIIQRISDAASTRRKMQR
Ga0208009_10208715	F051888	N/A	MTSFALSSSTQSFSCSHENPATQLDSREEYCVECNLQQEGSSVESALNLHEINRCEQESEPALSIDIPDEKGFSHQWTNRDGEYLEGVYDITNRLPSWLFLGKHVFPMFEPDEMTAYLALPSWAKICSKCNYQVNKYMGCLTCEVLYTNTAYRYRIA