Scaffold Ga0208009_1004672

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1004672
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3639
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F013514	Metagenome / Metatranscriptome	270	Y
F074866	Metagenome / Metatranscriptome	119	Y
F076129	Metagenome / Metatranscriptome	118	Y
F099191	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100467210	F013514	GAGG	MLTIEELQKYLDDHNITFEEWMRKNMITDEDRKYFDKIWMDVIYRNFGEDT
Ga0208009_100467213	F074866	GAGG	MTEIKSCINCKYYKDYRDPLEWVNSRIFGFPTPQLCTHPDRWKDVDYINGTVSPYTFCSVERKYGGSCGKEGKNYEVKND
Ga0208009_100467214	F076129	N/A	CSREDCRFAYGGGSVTLAYYPPVYDKNGVNINPDRNTTTVNIDCTTCGRMWVGKTCVGETTYEEVK
Ga0208009_10046726	F099191	AGAAG	MKRNNFDLMDAWIVLVAGGAVLVITVAPIIGVMKVITTQQALNEQCGTHYNFFQVATAGDNLSRLCQIKNQTVTIK
Ga0208009_10046729	F008402	N/A	MEITTSTQIRVQQSPSFYYTAEDTNIDVGCDGFTISYWEFDKEDGDTRVGSITMNKEEALAIADAIYKLFKN