Scaffold Ga0208009_1003258

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1003258
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4463
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F016962	Metagenome / Metatranscriptome	243	Y
F021758	Metagenome / Metatranscriptome	217	Y
F047018	Metagenome / Metatranscriptome	150	Y
F054814	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100325811	F016962	N/A	MDMIELILAALVGILIGWSASKKVHLDGFRQLLKALKITEDDLLRAMIKIQSREWQLDDQEGSTDETIVDVKLEQQGTEIFAYRKSDDMFLAQGSNADSLIERLNQNLTPCRVVVAQEDGADLLQKNNT
Ga0208009_100325813	F002052	AGGA	VREYQFVFNVVCASEGRPNMARVEEMIDLNMQDLVFDDEFIAALDEKQSVTIQVNLVK
Ga0208009_100325814	F021758	N/A	MKVIKLDRRYSGHGTWTHRTNGGAWYGDDARDRGLVAFYDMRCYMTQMNGPGCFIHEAWALKKAGRTVPEWAWDTDGNVFFRDSALVNFSLAKDRWL
Ga0208009_10032584	F047018	AGGAG	MLKLIGIAVVVYLGWITGVIQATLMITAGVLIAVAGA
Ga0208009_10032587	F054814	AGGAG	MAEVKLNGVYKVTVTEYDCGAQRIDPNDTRFYTTLEEAKAYKAHWETGGSRECYWRAEIEQIG