Scaffold Ga0208009_1002898

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1002898
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4714
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010917	Metagenome	297	Y
F019996	Metagenome / Metatranscriptome	226	Y
F037125	Metagenome	168	Y
F070036	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100289812	F070036	N/A	LHLKVRSERDNLYLNDNLANRRLKTLPDIDNLFNPLIVWASDSLICIFGNKRLKTAIDKGYTHIDCLVYRDFDKAVEVGTSIWNTFKQHGLSKVDYLLANDNQGMKNIDRYMVEEKQFIDIYATHQQILIQEALKCNEDIMETGCGYYSTPLLVEIAKCKGIKLIGFVQDINWARRFDYLIGSHYQQIQIDFKQEIPLTQRFGMCFLDHEQFVRDRIKHLNNILEHTDTVVVHDADKVESFALLHKPYTIEMHKHLTPNTAVIRNV
Ga0208009_10028985	F010917	AGAAG	MNLDKITFGSRIINLNLIDKEQASKKKIFGEIDCDTNTLTLDKSLDNIQIANTIIHELCHLIHDEYKLDLPAKAEELVCNSTANGLCHLLYQNQDLLDFLYKSLKR
Ga0208009_10028987	F019996	N/A	MVNKLEQHIKACHKCIVDLLMKKHNLKVKKQAPIKLNLKKYE
Ga0208009_10028989	F037125	N/A	MNQMCGRKKPKMLDKSLRGTNDLEVIIYNLKKEIDRLNEEVQAKDIELKKLQSND