Scaffold Ga0208009_1002853

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1002853
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4754
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F029443	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100285313	F008081	N/A	ILNPFGYGKASKVMDENRKPAEWWVEYIQFNEVVAENEFYILFADGFLIKKGKSKFRSSQYLKGDRFRSFKEFHEQAG
Ga0208009_10028532	F029443	N/A	MTLVDLVKKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVLWTVVRPSVYNGTTMRYDLVLLFADLLTEDKSNRLQIQSDQLLVALDVLAKLKLDNDYSFNTAPNGAIEFFQERFDDFTAGVSIAIQVSAPMPLNLCAIPTEPAS
Ga0208009_10028537	F001775	N/A	MLDDERIRIAILAFIAGVILAFIVYPRPEQETVYKFETKVETDTIYTRVVDTVYVPKMRIKSQILRDTILKEYKPQISLFKTSIPSEYGSTHLSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIVQKAKGIYLGAGVNSLLDPLAKVSYLDNKYLFQYSYQPVTKVHTLGVSKKLF