Scaffold Ga0208009_1001363

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1001363
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6884
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F003825	Metagenome / Metatranscriptome	466	Y
F028115	Metagenome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_10013631	F028115	N/A	YEKKLQERRYGSPGSRSAAVEDALRASFAVENKQDDPQTWSVAEVVDQIGASTPNEPPSCEHGHILKQGISKTGKPYYGYVCKGKVTEHAKWAKMTANGHWFFEGVE
Ga0208009_10013632	F003825	AGGGGG	VGYIAFINGKGIQVVMDDNGVHLEQTIIKCEVCDDDRVFKDGTCFKCHELINYDKPN
Ga0208009_10013633	F000141	N/A	MTSPTSFKCNGCKRATEFLWLDAIDMPDGFKTYQCMDCGCVGVKNVVEALSVPDSDISRCDKCGSWQFKEMPCHTCNLIGAK