Scaffold Ga0208009_1000960

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1000960
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8290
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (95.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000714	Metagenome / Metatranscriptome	924	Y
F000868	Metagenome / Metatranscriptome	853	Y
F003603	Metagenome / Metatranscriptome	477	Y
F007644	Metagenome / Metatranscriptome	347	Y
F024786	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_10009601	F003603	AGGCGG	MQSKEHKIGELLANSVEDHFFNPAALGRYLADQPIYTVDRVMEVVAWIIEKQAERYRREVANNGTISEGLIIANMLDKMIDKIKVSNDLKSVKLPITPKERGEFIKSLPEVKEQSYRYSWLHETNNGSNANINVTPVI
Ga0208009_100096010	F000868	GAGG	MSDPHGTIRNYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQMYADWCFADMAESNYLKGRFNQFYDLKPGDQYYIEWNEEA
Ga0208009_100096012	F000450	GGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWGSETGWGLYVNEIGDNEHKIAIIDFNQQTFSLHEEAPRNDKDNKVSGMSNQAIFTMDLSNFVEKYADVTLSV
Ga0208009_100096016	F000714	AGGA	METTDTYGATVTPAVPDTYNPNLLVTYKVIKGYSDPEYATDKVASIEWDLHNARQTQKSNAILHDKIDSVKNIITESFADSDDQETLRDIAEALGIELTKTVEWTATIEVSGTIELDILQEYDVESELYDNLYVDSQNGQIEIVDTEVTSAREC
Ga0208009_10009603	F024786	GAGG	LPTFRVFGTKYINYYTILEAADEYEAVDLANSLPETAWNSVESDDVIEATDIYLNEDTSMDLQLNI
Ga0208009_10009607	F000263	AGG	MEIKHSELPSHLQRMVDADINGLDIMHGELKNLMLIAEQNLTEAQAIEDETEEAMDSMERTRCEGALDTLVSLYALTYDLSFAIGLRTENRKDGHL
Ga0208009_10009608	F007644	AGAAGG	MTKSSAFLEYMKLHLISLNQDLESHDNPETKIHLDGQIVATRHLLSVATDIMNSTNERYE