NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1000922

Scaffold Ga0208009_1000922


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1000922 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8419
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (88.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F008237Metagenome336Y
F011484Metagenome290Y
F012770Metagenome / Metatranscriptome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0208009_100092225F011484AGGCGGMKELEQFLNVEAEWVLERLSTSTESNDRNYYQGRIDQLAQVRRLLGHPQIMREAVK
Ga0208009_10009226F012770N/ALDFDFGEEPHNYCNECDTQFEDSFELIDHVMEDDEEFDPYYLLPNAFKLHLGSLLRFLFIHADEPEQIKMITQSTYVTLFAAENGYDLVDELVEDMIVKSAVQNIDEEIRKLLSKDTNEEGGE
Ga0208009_10009228F001515GGAMATKSSFDLDFGYGRKGEQLVDDLLTGNLTVEVKRDRKWFKTNNLYIETECFFQKVQDWAPSGLGVTEAGYWAFVLQDSTLIVPTDVLRYAVKEFGREISCFIPPNQSKGFLITVDDLMTATRKYKDDDRVE
Ga0208009_10009229F008237GAGMTIEWNRIERWEYIVDAVASEYHRKFNIDAEDIRQILFQWFVEHPNKLDTWEAIGEKDAKNLIYRSLRNQALDYCQAWKAKSGGYETSDLFYYEGDMVEALLPSVIRGEMSITQKLNLAGGGRPSAPSEGGNLMAMMIEIDAGYWKLPKDDRKLLFLRYAETMDFGDIAKEMELGSEDTARMRHKRAIRKLINKIGGFKPYRDDDFEVQSSSDSDASAGSTYKASE
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