Scaffold Ga0208009_1000717

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1000717
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9488
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (56.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F008305	Metagenome / Metatranscriptome	335	Y
F009882	Metagenome / Metatranscriptome	311	Y
F034575	Metagenome / Metatranscriptome	174	N
F035304	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100071712	F034575	GGAG	MNSITLDPYLMKQVEMGMDGADILHGHLKTMMYEAEQIIDRCIEVEEESGEAIDSMARTEATGYFDALAEVYALTYAIAFAKEDIKNRKEVFDE
Ga0208009_100071713	F035304	N/A	MDLNTLREYIRIHTISLEQDLQNEDGADSIVPYLEGAIHVSKHYLEMINE
Ga0208009_100071715	F008305	GAGG	MLGYTYKDIQAFGNSLTWAIDTAKNQGDEQNYKQLLIVWDFFEGLLAEGYIEDVD
Ga0208009_100071719	F009882	AGGA	MSVADSIIKLTKQTERSPTMSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEPTYLTSKVTELEWDLHSARAREEALRSLQGTVRQLEDNIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVSFSGTISVPMSEIADFDLSNVTIDVDLSSYDYDADLRVDEVSLEDHY
Ga0208009_100071725	F000808	N/A	YSLTTSYDGELINTLRVSDMLEAVKAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYANGEVVIK