Scaffold Ga0208009_1000230

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1000230
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15716
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (45.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F010835	Metagenome / Metatranscriptome	298	N
F012771	Metagenome / Metatranscriptome	277	Y
F023575	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100023010	F023575	N/A	MANSKGLALVYGAKGTITLFTPAGVALTTGAITTIESYDATHEADVEQIKNGAGEVVAQVAANERISLSVTFIPSASTFAQAKLAAGLPAVNGYATIASSDDIDVGVVTAGQAINSIDGNYVYSGGGSVKFTSSGKVMVTVTLTKYLDATALTGNAPTFTL
Ga0208009_10002302	F001272	N/A	MEITIKLTQEQANGLLQLIDIAVKAGGIQNAKVALPLVDLIVNAAQAKSE
Ga0208009_100023025	F012771	N/A	MNIKPKRPTPKIFVVSDDTHKRLKEYAVKKGYKLQYVADEAIAEYLKRQESK
Ga0208009_10002309	F010835	GGAG	MNAVALRTERALVDWLAAQDWSESPLGTPACLTSYGHGAFADSDLEDRMPDFPRIVVRASTAVPVHPLDRTCELDVSAVLQLSADDTSEPHLLAVVQVFENLLQYLYVDGNISELNADDTDPSGGFNAQFAVPTDFGINDTSERARTFTRSMTIFAAANAI