Scaffold Ga0208009_1000105

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1000105
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23179
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (62.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F009066	Metagenome	323	Y
F014487	Metagenome / Metatranscriptome	262	Y
F026867	Metagenome	196	Y
F042872	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100010522	F014487	AGG	MPLLLITLFLCSCSQRPAESTGLPNYDMMQAAEDAGKTPSK
Ga0208009_100010524	F006891	AGCAG	VSADQVAELSERLALVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVVSTVWELIKRRFSL
Ga0208009_100010527	F009066	GGAG	VTPEHEKHLSGILRDLTRDLDAKYRKGQDEHGGALWRRPVWKDAWDEILDLCTYVHTLKMQLSVIAEIALIGAADESVVAAQSRESCRQILAVLEGFPSAADKK
Ga0208009_100010532	F026867	N/A	MSLGRLNDIAIKLRQENQALSLRQLGAAYGFGYVRIKQMQALPGFPLIAGKVIPSDFDRWRLMQTAPNSLHRGDRPHSAVGKARELTSRSDSRVAWQRIASNLKAEAWLHELHAGSGSSD
Ga0208009_100010534	F042872	AGGAG	VGSNPTPSDAYRYNDLCRNSNTAVITEPKKAHYQQLNLNSRGGYDLTPEAFIYHPNPAVFRMWAQQHEASK