Scaffold Ga0208009_1000099

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1000099
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23914
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071168	Metagenome	122	N
F072271	Metagenome	121	N
F090313	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100009914	F090313	N/A	MARNHYTTNGPRIASTSMPERAPESFNAWQEELQLERDLERILEDFKYQLREKLRTAYYNNTRSQSVMSTDPNGAKSHH
Ga0208009_10000993	F071168	N/A	MTIRKALELGPEDTNAAILYTLKELVNALECKVTMRTATDFDDAMTVITENYGWTLDELRHCFAMIRTGRLGPENLFERFKARELYACMRQYADERARHRMRHAAKYDPDVQDIKPATERTAQSLTAIADVLDLPAYKPKAGILGTDGERQQGVPAAAHQTQSEAQGQEAHPRAGSEEGRPVVQQAGAL
Ga0208009_10000999	F072271	N/A	MITELHGIWLWIAGILVLGYLLVNNIDLRWRLAKANARIRNLEKKLWTNDVEAILDEILGDPDERA