Scaffold Ga0208009_1000095

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1000095
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24205
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (44.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025994	Metagenome / Metatranscriptome	199	Y
F034156	Metagenome / Metatranscriptome	175	Y
F061822	Metagenome	131	Y
F095387	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100009511	F025994	GGA	VRELVAAAIREHQLRVALWSGLMGALLMAGTWHAIWMCR
Ga0208009_100009513	F061822	N/A	MEHATLADADALMAEVDALLEQAAATDARVDALLDGWTPRPATALRRLQRTARHTARLSALVERQQAALAAQLDAMERDA
Ga0208009_100009521	F095387	GGAG	MTAAQPLECPGALSDLILQAARQALPANPQQLIRLPDCGERNQPLMPLLVGLIDAAKATASAINDNAWDAGPALPTEMADTLLTDLEIIRQCIRSAEDAF
Ga0208009_10000953	F034156	N/A	VGPEIVIAAIGLGSGGVAALWKIANGLGRFEARTTTILGGIQEMLKDHEERLRDVERRAEGGR