Basic Information | |
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Taxon OID | 3300027114 Open in IMG/M |
Scaffold ID | Ga0208009_1000095 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24205 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (44.23%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025994 | Metagenome / Metatranscriptome | 199 | Y |
F034156 | Metagenome / Metatranscriptome | 175 | Y |
F061822 | Metagenome | 131 | Y |
F095387 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208009_100009511 | F025994 | GGA | VRELVAAAIREHQLRVALWSGLMGALLMAGTWHAIWMCR |
Ga0208009_100009513 | F061822 | N/A | MEHATLADADALMAEVDALLEQAAATDARVDALLDGWTPRPATALRRLQRTARHTARLSALVERQQAALAAQLDAMERDA |
Ga0208009_100009521 | F095387 | GGAG | MTAAQPLECPGALSDLILQAARQALPANPQQLIRLPDCGERNQPLMPLLVGLIDAAKATASAINDNAWDAGPALPTEMADTLLTDLEIIRQCIRSAEDAF |
Ga0208009_10000953 | F034156 | N/A | VGPEIVIAAIGLGSGGVAALWKIANGLGRFEARTTTILGGIQEMLKDHEERLRDVERRAEGGR |
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