NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1000085

Scaffold Ga0208009_1000085


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1000085 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25079
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001900Metagenome / Metatranscriptome620Y
F005053Metagenome / Metatranscriptome413Y
F005054Metagenome / Metatranscriptome413Y
F005479Metagenome / Metatranscriptome399Y
F071173Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0208009_100008510F000258GGAGGVTANYKLDAMLELRKYLWEELSSRDIFDADDYWSDNLNENIVPIIPVQQAPELNQFMSGKKHIVYDKIGMSYDDNWLICCEQILFTVYSTAVAEINEIRNYMTDEFRRMDESARDINRWAGLSDKFKFHSVHIADISPTAPSEELQGFFSSEIILEIKYSRDTDTNGASSTLGRFL
Ga0208009_100008513F005479AGAAGMPELVNTLKALKKKDYDSKKFQASLAGVDIGEYEEEKKTSSFDEIQLRAAGITASADDVVSLQGRFAADAGFGIGAGLGYVKE
Ga0208009_100008515F005053GGAGGMPMILPRGSVLSIEAKDLLATPEGTTKIWNKITEHNRSDIGISIERIEKAVRTSNGTLRKNHVADKRRFSLSWTMLPSYRTLTVDGAWGAEDLRSFYLSDDGKKEFNIRLNLAKGGADTSSSGALYTPNMAKTSSELYTVVFGGCNFSVVKRGLQPHWNISIELEEV
Ga0208009_100008518F071173GGAGMITKFGKRFLTSYLSGNNDFASRELALGIGSSTPNVKGNDTKLDFEFYRLPVELSGFNILQSGVDVDGDPVYSYFVTYKSTIPQDVSGVVSEVGLYPGDRQSFNNFDSKFITSFTNEFNWFNGSDNPTSQGNTQDASGNYTFLSKVSDSMIKVDVSSGQTKEYINSLISDDISGYSINDTISIAYKKADNNLSKIRVKFYSSDLAYYYVDFTPLSGTGDRIQTLTLNNLFSNYTAAPNLPDPSSIIKIGVATTASGGNTTVYFDAIRINDEDTFDPGYGLISRSVLSTPLIKKAGRPVDIEYKLQLDF
Ga0208009_10000857F005054N/AMAEILINSQSPIVHQIFWNGDIAVADALPIVKIYDVTLDARVSPAVLPTTVLATITSTLDENNPGTYVVNVPYALTNRNKTLKVNWEYSVGGVAVVRSDEVQVVTPYIDFNYIQDLGYSTDSSDPSYKSYKELIRAERYARKQIEEYTGQKFYLYDETLTVYGYEYDTLPLPAKIYQLHTLSVNDILLRDNINNIDNWNFPVQISESGYSIRINRAGMVDNTVYTANGMVPPSIHDYSGVFHSGVPYKVFARFGWEKVPENVELATAELMKDYFSKDTIWRNKYVKSISTFDWDFEYTGDAYTGTGNALADNLLADYVLTIKAEII
Ga0208009_10000859F001900GGAMLIQAASGLERMMYSNQNGPLKDSTVAQISAYVYYEAAVISKLTTNRAFQNSFGKLMFDQINLDFGNYIDALARSKPKSLHHVYEWKKTGNKSARLFKLNKGVQVGLSFSINYQFLPSRTIVPSSNGKRRHMFIDKASVMERGEPLVIRPKNAERLVFEIDGETVFMPKGASVTVKRPGGSAARNQFTLAHSRFFSGNLINDSIKRSGFQRLFNSSITKALGVPSNIKRVQYSFSANTIRSQADSALTLAFGGAM

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