Scaffold Ga0208009_1000019

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1000019
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52183
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (91.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F007521	Metagenome / Metatranscriptome	349	Y
F015204	Metagenome / Metatranscriptome	256	Y
F017819	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100001915	F007521	AGGAG	MAGRGMGCATRGGGAVESGPKNKVMSEPSKTTGPVMMKKGGMANKGGINQHKRMAMGKPVGKMGGGMMAKGYKKGGAAC
Ga0208009_100001954	F017819	N/A	MRKRSKYRPKPVLQSPMDYILSGFKPVRELPGIYLDAQLKNRAALEQVRVGHAVKEDIDMLIGAFNITEALAMSGMGSDWMDEIRQGQDALLELSRRGVARGMRFIMTAKEWEKLKLVMDLHEEQLAQATVYDIEKAHDFVYREIAQGKASAIVQTKKEEA
Ga0208009_100001967	F015204	AGGTGG	MTFPEWWSQLTKPEQRAIGENNALFVWQECQKYTLMTIEEACKAQVAYDQGFKDGRERFEVKVAGWTLTPGVQPGMIWISDAGGEGGDFHIYELAEVIGKFYKEKF
Ga0208009_100001969	F001629	AGGAG	MKLNQGELAQGLVDELLEVIHRYDEAFYMSTVIGVLELVKQQLINDSLENQDDL