Scaffold Ga0208603_1055142

Overview

Basic Information

• Taxon OID: 3300027109
• Scaffold ID: Ga0208603_1055142
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 602
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004042	Metagenome / Metatranscriptome	456	Y
F010654	Metagenome / Metatranscriptome	301	Y
F036398	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208603_10551421	F010654	GAG	VKQHLGRQSGVQNVEVSLLDGKVDVTPKEDGQIDPVQLLKATYDSGVTAAEMDMTARGKIVKDALGSLALQVAPNRSFALVPNDLSKGLELLADSPTM
Ga0208603_10551422	F004042	AGGAGG	MNTRTLALLFLLGSVFVPASQAQIKHIEMRVEGMT
Ga0208603_10551423	F036398	N/A	GDELLAGVTTYVGVRPGTHVWLGMDWDVGHSAGATFMPVRHHISFGITQQFRLHFK