Scaffold Ga0208367_100674

Overview

Basic Information

• Taxon OID: 3300027107
• Scaffold ID: Ga0208367_100674
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF029 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2025
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.471116
  • Long. (^o): -72.17263
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013663	Metagenome / Metatranscriptome	269	Y
F037832	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208367_1006742	F037832	AGGAG	MTTQERTVEPAMAPSVYLSLRNAVRPAIYAHFLLAEDQERAGQLAAECEDLLFLTRELLKAVGLAGILGAGPAVVDAAVDEDGGDRQAQLLGAYAEAGLLWAKVVGSTMALARGLLDRGDRDAVRRLAGFLAEAGEDGAATDLKIGLGKAVWATHRESLQNISNTMPPAAIGTAIDALRAVLLEVPEDYPDRNREVNRFLAPLAASVHAIMRAQEIAIPYGSRLEHIAAGGVAKYPDIVKLSLDEIAAEFEGLCNRPGNE
Ga0208367_1006745	F013663	AGGCGG	VIHTRPDRDGEEQLRLLGAAWEEAAQHWQDEVARQFDTGHWTPLVQQSRTYLEALRALMDLLETAERGTEF