Scaffold Ga0255581_1068499

Overview

Basic Information

• Taxon OID: 3300027103
• Scaffold ID: Ga0255581_1068499
• Source Dataset Name: APAL control metatranscriptome co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1142
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Panama: Bocas del Toro
• Coordinates
  • Lat. (^o): 9.1956
  • Long. (^o): -82.1254
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083686	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255581_10684991	F083686	N/A	EPVLLKFYHAIPYYHPLLKNSLRAMASLHAQQFEILVACTCNCFSSVGMLLFNKLAVQALPLECSLVWLQLFFAAFFMLIFGFPYLHIGSMKDFLRWCMVVPFFTGMLMTSILALKKAPMSLVIVLRSASPLFSLIFERFYPEPLRISGPMVCAIVVMVAGAVMYVSQLHAEHWEGIGWVMLNSIVAVCDRLLQRLLLSKEQHPVDISKTGITVINNMMGLIPVGMAAYFTGEVGQFPYAYANLTGLDKVYIGLSCVIGLSIGFTGIWAQSLISATSFLVMVNANKFVIIGIEAFGMHTKVLTHGQILGASLSILGGILYGKARQQIEQEEEERKQLLPSVKV