Scaffold Ga0255581_1029807

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255581_1029807

Scaffold Ga0255581_1029807

Overview

Basic Information
Taxon OID	3300027103 Open in IMG/M
Scaffold ID	Ga0255581_1029807 Open in IMG/M
Source Dataset Name	APAL control metatranscriptome co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1849
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location Name	Panama: Bocas del Toro
Coordinates	Lat. (^o)	9.1956	Long. (^o)	-82.1254	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032924	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255581_10298071	F032924	AGG	MIKFLPLDFLDVSYRSPXKDKNAVYRLQISALVLEIFKFEKXVKYANEMTDDVIHSTQYYINY

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