Basic Information | |
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Taxon OID | 3300027098 Open in IMG/M |
Scaffold ID | Ga0209367_1030334 Open in IMG/M |
Source Dataset Name | Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus LIZARD ISLAND.2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4729 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Sauropsida → Sauria → Archelosauria → Testudinata → Testudines → Cryptodira → Trionychia → Trionychidae → Pelodiscus → Pelodiscus sinensis | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Max Planck institute for Marine Microbiology, Germany | |||||||
Coordinates | Lat. (o) | 51.321602 | Long. (o) | 12.394572 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F082141 | Metagenome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209367_10303341 | F082141 | AGAAGG | VVCTLPEGQPVGGVTLLGDEIYLVRPKGVGEVEVYDAISYRLLRCLTVPNARSFTDMTSCKHFLCLYISDSRVECVHRLDLQGNATQWPVNDEPCGLSVNADHNLIVTCRKVCKIKEFDTRGDSLRDVALPDDVINPMHAIQLASGQFIVCHGRRRLNDPVHRVCKISEDGRRVVESHGGQKGSNIGQYNVPSHLAVDDNEFVFVVDANNR |
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