Scaffold Ga0208237_1003972

Overview

Basic Information

• Taxon OID: 3300027080
• Scaffold ID: Ga0208237_1003972
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2031
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003851	Metagenome / Metatranscriptome	465	Y
F015067	Metagenome / Metatranscriptome	257	Y
F026325	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208237_10039723	F026325	GGAGG	MMTDPASAIKREVHQLVDLQIETLRQPSPLTASDLSDYRVRSEKITTLFHELDQLRRAIFERPLRRAS
Ga0208237_10039724	F003851	AGGAGG	MKQRKLAGASSQTNDENAERVLRALEEARHGRVNTNDPIVEQLRQCPEAFKVGEIIGKAFDSLKYSQDGGELGDRYFPPAGTVLPPPV
Ga0208237_10039725	F015067	N/A	VIGLPLQVTFPRLKGIRWRYCTRWDEGPAAVLGISLLRLGICQPNDWSGSAVDFVERGFKRFCLQNHVAAAKRVWVGDLRITDSLFELTEQERNLVEAEREGVTDHLYVIGDYEAAASIPIGATLTRLEAEHAHLAAAFYEVFTTNLYKWMRVYDYLDAQEHAETWMEDLSEEESEASVYRKVDLEIPACIKSHSRTFKYRRARTLLQEIRPHTSVTRELIR