Scaffold Ga0208941_1035452

Overview

Basic Information

• Taxon OID: 3300027077
• Scaffold ID: Ga0208941_1035452
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 658
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F046006	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208941_10354521	F000720	GAGG	MILQEDKIMRHEIPNRMMSTTFTLPIDNRKVIGIVNYTAGAEGITPLAFWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVNYFNKNVEEIISGLQPNKKQRMLSTDPYASQ
Ga0208941_10354522	F046006	GGAGG	VKEYLGPLAKYINLILLLIILHFCITVMVVNFRYIDKLNITIDTMWHEIEQVKDTNISLYQFIEEHGDDITGR