Scaffold Ga0208941_1000736

Overview

Basic Information

• Taxon OID: 3300027077
• Scaffold ID: Ga0208941_1000736
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7602
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F002682	Metagenome / Metatranscriptome	537	Y
F006589	Metagenome / Metatranscriptome	369	Y
F009922	Metagenome	311	Y
F071638	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208941_10007361	F002593	GGAG	MSKLIYSKNGSQTTESIRNASPMIQAVWNQANKFGANIVRVRAYQDRFGNDTGKTFNSYHHEKVSVYKQKDEVHESNALYFAQKIPVTKSNKGMQILEVASNLDVQDTLDIIDEIQYYAETSFLGRLWNRIRYGTPMSITD
Ga0208941_100073612	F002682	AGG	MSKQIGSDEKPYTFKSPIYKNTHGSKGANPRPGFYTQDYRDNWDRIFGKKNEQKEGKNER
Ga0208941_100073613	F006589	N/A	MKDKIEKKINSIIETNDLTDMQVWGIWCGIGFVCAFVIMWVI
Ga0208941_10007364	F071638	AGGAG	MSKNIDTKKFNSNEKALRYIKELGFNLKDRHCFKEDRSFLYTKKFSKQQVYLRSTYDFLNDNTIEMGTVWTVQVF
Ga0208941_10007365	F009922	AGGAG	MENTFDINSFDKERTEAPASFPQCRALGYKFAKKGEVMNWKLQKQIQGCMYALAKDQRLTFKKAHQLLQGKTLPKVYFDKIKLHLKENS