Scaffold Ga0208941_1000426

Overview

Basic Information

• Taxon OID: 3300027077
• Scaffold ID: Ga0208941_1000426
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11460
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (28.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008384	Metagenome	334	Y
F016811	Metagenome / Metatranscriptome	244	Y
F024348	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208941_100042618	F016811	N/A	MQNNEESDGQVIYDLGIRLTWKKKRGNGYTNMYFGTKDRPFQFVTRAKSIDHINRNPIMIAKMMSFVGATGKSVYDFHIIEEFYRKEISNSFSHKEEDYIKEFGE
Ga0208941_100042625	F024348	AGCAG	LTQKKLIGCARHTNMLFEEHYEDLTDAEANLILDIYKVIDELVYFGEPVTLVRLGFELGIRPDELSDYLAIIVTILNKVEEEYAEIRQGSN
Ga0208941_100042626	F008384	GAGG	MPRYDKALIEEEAFKSVEQGYLTEELGTFILQRAIEISGSAFVTDGNNELKQALIDSAVMRTCEKFLHYYQSGKSAANLIISIIYSTMTNKIVSLNHSDVYGQNIKGYLTFIEDGKAVTKLKRYIKDDYLSEKL