Scaffold Ga0208365_1000356

Overview

Basic Information

• Taxon OID: 3300027070
• Scaffold ID: Ga0208365_1000356
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4088
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.180244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006631	Metagenome / Metatranscriptome	368	Y
F015921	Metagenome / Metatranscriptome	251	Y
F047418	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208365_10003562	F047418	GGTGG	MHKFKIGARLFPTRLDVREGAYVVIKRLPMRDGEF
Ga0208365_10003565	F015921	N/A	VPKKPTQWEVYRPIKGSPGAFIGVVEAPDETSALKTAIEEFGIVNPKYQKPLFVRRMPGDDE
Ga0208365_10003566	F006631	AGGAG	VEKHELSKVEFEIIDKALKTLLQSNLDPVTADKVTDLRNMFQDAFTGWLEIDQEAA