Scaffold Ga0208859_1000169

Overview

Basic Information

• Taxon OID: 3300027069
• Scaffold ID: Ga0208859_1000169
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4634
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009039	Metagenome / Metatranscriptome	324	Y
F014081	Metagenome / Metatranscriptome	266	Y
F084557	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208859_10001691	F084557	GGAG	MRQDAVTHDVVLARWDGPKRKFRIYGRPMPGNGDIIALPVDGRLISARVTVRSEKPDMEQSVDAELVELAE
Ga0208859_10001692	F009039	AGGAG	MRSSFAVTTSLVLLLGMGVADAADPTQLAETGGFLLGNASRCGVSAERVESAGKVIHDFIAAAARDSSEAAAADSRFSEIFVASALPDQDPDAFPSCTVVIQQFDRLERHHETRTSRETRGISPAF
Ga0208859_10001693	F014081	AGGAG	MGPYDGLTPEERARITEIQDFLIDRYVEQKEALERGDDARAKEIGLEIKELQREKEEIKEWAAT