Scaffold Ga0208959_1014191

Overview

Basic Information

• Taxon OID: 3300027062
• Scaffold ID: Ga0208959_1014191
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_80 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1188
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051547	Metagenome	144	N
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208959_10141912	F051547	AGG	MIDPLLIATISVIGGAILNTVRGFLGSSESTYDIKKFFGALIIAVFAGIAVAQTLSLAGLGITETVLIGLSVGFSVDYAVSKAKKTA
Ga0208959_10141913	F060433	N/A	MEFSAIIETLLIAALLGMGGALFGFFRKMSSTQKDLCETVARLQKTLIILAKAVDRQSNRLHPDEANSELDDLVKELLDKP
Ga0208959_10141914	F071758	N/A	MDEKCKNCKINKYGYTDGQHSIFICFKCGRYDGISGGDDAFIDRINEEPMALLHMIQAKILIPISGV