Scaffold Ga0209729_1019695

Overview

Basic Information

• Taxon OID: 3300027061
• Scaffold ID: Ga0209729_1019695
• Source Dataset Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 810
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000037	Metagenome / Metatranscriptome	4230	Y
F001891	Metagenome / Metatranscriptome	622	Y
F006915	Metagenome / Metatranscriptome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209729_10196951	F006915	N/A	MDAETRDLALLATLSLFCAGFAWSWGYVILGSVFFALGGVAALGIAERHWD
Ga0209729_10196952	F000037	GGA	MDKDYLTLKRASASRPSGEWSDDDYDVIADGVVVGRIMKAAVSPVGTPWMWTLLLYHEGRTPTHGYEPTREAAMAAFAKSWRRE
Ga0209729_10196953	F001891	GGAGG	MDRENSMRAIGLVLLSIAIMALLLTDADAKRRSSAQGSQAAGASRSWCAVHPRHGSENCGYTSFDQCWATIGAEGGWCRPNPFSATPYGTGYTWSGPKR