Scaffold Ga0207796_1026162

Overview

Basic Information

• Taxon OID: 3300027057
• Scaffold ID: Ga0207796_1026162
• Source Dataset Name: Marine sediment microbial community from Union City, CA, USA - Pond 1C Sediment 1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 950
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Eden Landing Ponds, San Francisco, CA, USA
• Coordinates
  • Lat. (^o): 37.569083
  • Long. (^o): -122.103267
  • Depth (m): .32

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021885	Metagenome / Metatranscriptome	217	Y
F049303	Metagenome / Metatranscriptome	147	Y
F090093	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207796_10261621	F090093	GAGG	MNIRTIVVIACLYVSFFGLPNIELPNVQPPAPETPDVREPTAELRDAVQDVADICEKMDAFDRLVWMSTWEECSTIVAGEDDDVSLVFDNTLGLRLFTDSTFDVAWSRLANASQKYRGLGEAVEKAFTQVIGNDV
Ga0207796_10261622	F049303	AGG	MSTLINDPVRVLAVVAAAAVLLAPYLPAVLKRLKAAWASLPSVPKTPPDGIGVSDLTMVLDLANRLRLDGHEKATDLAKQLLDAMLEVPQK
Ga0207796_10261623	F021885	N/A	MNIFEKLKLLAEWSPLLTFAQQLAAEDDIHAKAVIVTEAMEWVADRTSVEWDDELASHISDILISEEGEAFVRWILERMQVSDVDVD