Scaffold Ga0209269_1008979

Overview

Basic Information

• Taxon OID: 3300027051
• Scaffold ID: Ga0209269_1008979
• Source Dataset Name: Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKM (Arthur Kill Methanogenic) MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2858
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Enrichment Culture Microbial Communities From Rutgers University That Are Mtbe-Degrading

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Arthur Kill intertidal strait
• Coordinates
  • Lat. (^o): 40.58
  • Long. (^o): -74.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088355	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209269_100897910	F088355	AGGAG	MKNLTNKISVFAGRKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_10089793	F088355	N/A	MKNMTNKIGVLVGRKGQLILAILTIALFVLAAGAPNATLGIGR
Ga0209269_10089795	F088355	AGGA	MKNLSNKISVFASKKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_10089796	F088355	N/A	MKNLSNKINVFVGRKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_10089797	F088355	AGGAG	MKNLNNKISVFASKKGQLVLAILTIALFVLAAGAPNATLGIGR
Ga0209269_10089798	F088355	AGGAG	MKNLTNKVSVFASKKGQLVLAILTIALFVLAAGAPNATLGIGR