Scaffold Ga0207766_1037888

Overview

Basic Information

• Taxon OID: 3300027042
• Scaffold ID: Ga0207766_1037888
• Source Dataset Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 540
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001490	Metagenome / Metatranscriptome	685	Y
F005331	Metagenome / Metatranscriptome	404	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207766_10378881	F001490	N/A	VYAYTYTTCMKRPQAAQTTQLLQQIAQIHYMEPGKLCVLRQGPNGPYYNLQWREQGKAFSRYVPADEVEVLAQHTTNYQTFQNLVDQYAQLIIERTRAERAAGFKKKTPVPKSS
Ga0207766_10378882	F005331	AGGA	MARFQTQEPNGLAVQQLEVLVRTAVFKSANALVGFLLQEAANRIDADYQPKPGQQY