Scaffold Ga0209372_1041899

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209372_1041899

Scaffold Ga0209372_1041899

Overview

Basic Information
Taxon OID	3300027033 Open in IMG/M
Scaffold ID	Ga0209372_1041899 Open in IMG/M
Source Dataset Name	Agave microbial communities from Guanajuato, Mexico - At.P.e (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	618
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location Name	Guanajuato, Mexico
Coordinates	Lat. (^o)	20.6863	Long. (^o)	-101.8747	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103986	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209372_10418991	F103986	GAG	MVLVVCERVNYISDEDPNLAKVSSDLLHQPCLMARDGQVKYDGEEVPAVAVAERSSSSPYSRSDIEDTPLDGLLGKGMVMNEGLQDFLLPLDLKNTIALSLVS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.