Scaffold Ga0207814_111755

Overview

Basic Information

• Taxon OID: 3300027026
• Scaffold ID: Ga0207814_111755
• Source Dataset Name: Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (2) (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1514
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. Root1204 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Aerobic Enrichment Media → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.967317
  • Long. (^o): -67.018833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049899	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207814_1117552	F049899	N/A	RGSVTATIVGALFLTYLGQLVLAVGFETSAQNIVQAIIIIASVGLVEAGRRLRFEWIRFKFWITSPDVEFRIRTTFTRTMTRLGLAKLLDVAPQVRWRWRTAYLRLKKRLDITE