Scaffold Ga0209093_1000141

Overview

Basic Information

• Taxon OID: 3300027009
• Scaffold ID: Ga0209093_1000141
• Source Dataset Name: Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36979
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (82.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Rhodophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Sidmouth, United Kingdom
• Coordinates
  • Lat. (^o): 50.677
  • Long. (^o): -3.24
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061494	Metagenome	131	Y
F066406	Metagenome	126	Y
F068389	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209093_100014139	F066406	GAGG	VSAASRPPTRANKLPVTQLVFVARGVFRRSTPCVCALRGFLPGRIFRDRTTRRHGLARLPPDCLGLAGRVLTIGGAAGEEGDSTFLGVVALHQPASGGT
Ga0209093_10001415	F061494	GAG	VCVAFPGRDYNLPTRVGIRTFYLVATPSFLVVRVSRFAWLLSASDHYAGPDVLSGGDVTPAYVDGHAPGSVRGWDTWFLGLGSAPADAG
Ga0209093_100014163	F068389	AGG	VSGQFEVLATDERTYLIDQDGLPYRVSGDHVVPAGPMDAGNRPKQPQVAVPDALQQGGSKFVFERFVDHTWDEEGVLWLLVRWFGYGPEDDTWQHLGRLPVAAVYPYCRRTGLLPQDPDKVVPLWENNEQL