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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027009 Open in IMG/M |
| Scaffold ID | Ga0209093_1000086 Open in IMG/M |
| Source Dataset Name | Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 45925 |
| Total Scaffold Genes | 64 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (82.81%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sidmouth, United Kingdom | |||||||
| Coordinates | Lat. (o) | 50.677 | Long. (o) | -3.24 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027093 | Metagenome | 195 | Y |
| F027729 | Metagenome | 193 | Y |
| F038959 | Metagenome | 164 | Y |
| F066406 | Metagenome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209093_100008613 | F027729 | GAG | VTAAPGPPGDPQTLLKNLRVPQDVVVPEGHQHTGKEFVWEAFVGNKVADDGTLRLWTGWWGYHPEEDTLKFASRFHLRKVHQYVWRLGLQVEETWSVVEFLAYGDPRAMTR |
| Ga0209093_100008637 | F066406 | GAGG | VSVTSRPSTRESRLRVTQLVFVARGFFPPSTPCVCAPRGFFPGRVFPDRTTRRHGLAHLPPDWVGVAGSVVTFGGAAGEEGDSTFLEVVPVRQPAPGGT |
| Ga0209093_100008642 | F027093 | GGA | VVANLTGSNFQLASPIWLVAGRGLALRVIVDTGSGVSLVREALLSLEMKVAPLDAATAQLFDVNGGLLPITGTVTLTVRVGTYSTPATCGVLRGMSAPLLLGTDYTHFHVLNICGPEGYIQVLDGCKVAILRRGKTVSYAKADQPGQAGAASEADAKVHLAREIVLPPRSRGCVPVQTSFEGTGVITSAIKCMSAIACMWQLAPWTVPPTRLGGCK |
| Ga0209093_100008653 | F038959 | N/A | VERYNQTIAGKLQTYVEDHQDRWDELVSMLTLAYNSRPQQSIRVAPLELDTPERVRSFSVERMLGSPTPEETDGSPRAIREVIRARLRNLIHKVRRSLTLAQRRYKRSYGARVRPVNKEVRAGEWVLVDGDVRSKYKLGTRAAGPYKVLTRGEGTFSLEIGRYPETVSSDHVTAARGPPGDPQTLLKNLRLPQDVVVPEGHQHTGKGFVWEAFVGNKVADGGTLRLWTG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |