Scaffold Ga0209896_1000057

Overview

Basic Information

• Taxon OID: 3300027006
• Scaffold ID: Ga0209896_1000057
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8606
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012397	Metagenome	281	Y
F041299	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209896_100005711	F012397	AGGAG	LNKILTLIILATTLSLLSSLSHASGEIKVTPPSNWQPSPSNNSTTMAWFQNSTKSVFAIIKAPDNLVFPMIFVGPFMSQFFANEGVLESADQLSFGHSNYGYRYFLNLSSPSKLLNSSSGFIEKFLPTIPKGYDVPFKGMLILTQKEGDMYAIIFLSPKENFDSILNEIKPTVDSIQLSKSTQTLN
Ga0209896_10000578	F041299	AGTAG	MVAYSTESDEIYDRMKSQARFTLLALVAPSCISILLFYIVGYFYSHIFSLLNGLPGVIILSGSAIVVMKLLFYTKLERSEIHKFSSLLLGIFCFLIGETLYFYQQYFLQITIPYPSVAEVPYLLGSLFFSYFLFLCLFSLINRKGFNPLPIILGSSVSIFPIFLILSSAYDLEINKSTELEFIVNALYYTFDALMMVPALVILLNLKKNDPFIFHWISITVALILLVIGDVGYTYFSIISESLIEEFEWLWSIVYALGYLFLGIGIYWFDRIKNTLEDKKINIFLEKDEMDRLKNSSKNELIGDMGTEYSEHIIGYENFVDKLEDFLERSKQIKILFYDKYWLSDEKMSVILDKIQQRAFVTQIQVNILLPISQISFKSFVSYTDNRNILISFFDRTFSSDSLVFIFEEKYVAILDKKPASEFVDNNTEFYGLITNKDTIVWSHIATFEKIWLLEKAVNM