NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207784_1004213

Scaffold Ga0207784_1004213


Overview

Basic Information
Taxon OID3300026997 Open in IMG/M
Scaffold IDGa0207784_1004213 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1718
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010862Metagenome / Metatranscriptome298Y
F043334Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0207784_10042131F043334GGAGMRNLVISVLVVGLLSLLPLSPRVGPSSGLLPVSISLGQDEAKAYVTYRRARVATRRGYRRAYRHSYYHY
Ga0207784_10042132F010862GGAMNRLLILGILIISTAPLFAQAQQPNAAELAQKVVSIISGDKAKTQTYCQILDLSDELDQADPQKDREKAEKLSQKINELQKKLGPEYLALLKATEHVDPNSKDGQEIVSIFDKLDSSCGGKQ

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