Scaffold Ga0208761_1030273

Overview

Basic Information

• Taxon OID: 3300026995
• Scaffold ID: Ga0208761_1030273
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 545
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Solihabitans → Solihabitans fulvus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006628	Metagenome / Metatranscriptome	368	Y
F045340	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208761_10302731	F006628	N/A	EMIGRLIKAALIAVVLAAIVQSLPDIKRYLELREM
Ga0208761_10302732	F045340	AGGCGG	METVIGFIVGYLVGTSQGRAGLAKVRTSAEAIRTSPELRRLAGEATGIAGIVLKQATPRGVAGAASEVTGRLLGRQDAERPRAA